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期刊论文 8

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中医;药材推荐;知识图谱;图注意力网络 1

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Impact of introducing a herb pasture area into a New Zealand sheep and beef hill country farm system:

Cécile DURANTON, Cory MATTHEW

《农业科学与工程前沿(英文)》 2018年 第5卷 第1期   页码 87-97 doi: 10.15302/J-FASE-2018202

摘要: New Zealand is well known for export of meat and dairy products from low cost pastoral systems. These farm systems are continually evolving for increased efficiency, in part through the use of metabolic energy modeling tools by farmers and farm consultants to explore alternative farm system configurations and identify new efficiencies. One recent innovation is the introduction of a herb pasture area, such as plantain. We used metabolic energy modeling to quantify seasonal feed flows in two successive years in a New Zealand hill country farm system, and to analyze the impact of the introduction of an area of plantain. Models employed were a self-built Microsoft Excel spreadsheet and a commercial New Zealand farm systems modeling package, FARMAX. Herbage production, animal performance and financial results for a base farm scenario created from the average of survey data for hill farms in the southern North Island, and the same farm with 10% and 20% of the area in plantain for the years 2010–2011 and 2011–2012 were modeled. The self-built model performed similarly to the commercial model. The system configuration of the base farm stockpiles surplus autumn feed for release to animals in winter and also incorporates flexibility that confers resilience to interannual weather variation through varying dates animals are purchased or sold. The introduction of an area of plantain was predicted to increase herbage production, animal performance and financial returns. The predicted benefit was higher for the year 2010–2011 where a drought occurred in summer than for the following year with higher summer rainfall. This demonstrates the profitability of introducing a plantain area to New Zealand hill farm systems, and suggests plantain will assist to mitigate adverse effects of warmer and drier summer conditions associated with current climate change trends.

关键词: farm system configuration     herb pasture     metabolic energy budgeting     plantain     sheep and beef farming    

SUSTAINABLE CROP AND PASTURE SYSTEMS: FROM ABOVE- AND BELOWGROUND INTERACTIONS TO ECOSYSTEM MULTIFUNCTIONALITY

《农业科学与工程前沿(英文)》 2022年 第9卷 第2期   页码 167-169 doi: 10.15302/J-FASE-2022446

摘要:

Intensive agriculture, characterized by strong reliance on excessive amount of external agrochemical inputs in simplified cropping systems has contributed successfully to feeding an increasing number of humans, but at the expense of severe resource and environmental costs. Consequently, the Earth is facing multifaceted challenges, including increasing food demand both in quantity and quality, global warming associated with extreme weather events, soil degradation and depletion of natural resources. To address some of these challenges, we have developed this Special Issue on Sustainable Crop and Pasture Systems for Frontiers of Agricultural Sciences and Engineering (FASE). The issue addresses the research frontiers of two main themes: (1) aboveground-belowground ecological and physiological mechanisms, processes and ecosystem functions; and (2) the synergies and trade-offs between multiple ecosystem services in sustainable crop and pasture systems. There are 10 articles in this Special Issue including review and research articles with contributions from Australia, China, France, the Netherlands, and the UK. The contributors are all highly-regarded scientists devoted to studies on mechanisms and applications of sustainable crop and pasture systems.

Sustainable crop and pasture systems have a potential to enhance the synergies in multiple ecosystem services, consisting of higher food production, lower environmental impacts and climate change mitigation. To innovate sustainable cropping systems requires deeper and comprehensive understanding of mechanisms underlying above- and belowground interactions. Hans Lambers and Wen-Feng Cong emphasized the importance of diversifying crop species or genotypes with complementary or facilitative functional traits. This will mediate key ecosystem processes related to water, carbon and nutrients, contributing to higher resource-use efficiency and enhancing synergies in ecosystem services ( https://doi.org/10.15302/J-FASE-2022444). Root functional traits such as root exudates are pivotal in nutrient mobilization, either directly mobilizing plant nutrients in the soil or indirectly so via modifications of the soil microbiome. Cathryn A. O'Sullivan and coworkers reported a novel role of root exudates from canola in inhibiting nitrification in soils. They found that these root exudates (called biological nitrogen (N) inhibitors) can significantly reduce nitrification rates of both Nitrosospira multiformis cultures and native nitrifying communities in soil. This would reduce nitrate losses, but increase plant N uptake and microbial N immobilization, subsequently benefiting the following cereal crops through mineralization of this organic N pool ( https://doi.org/10.15302/J-FASE-2021421). Jonathan Storkey and Andrew J. Macdonald used the longest-lasting grassland biodiversity experiment in the world to examine the relationships between plant functional traits and ecosystem services. They reported a strong trade-off between plots with high productivity, N inputs and soil organic carbon and plots with a large number of plant species with contrasting nutrient-acquisition strategies. An increasing proportion of forbs with greater longevity and lower leaf dry matter content can partly mitigate the trade-offs between plant diversity and productivity ( https://doi.org/10.15302/J-FASE-2021438).

John A. Raven further explored synergies or trade-offs of ecosystem services regulated by above- and belowground interactions, mainly functioning through energy, material and information pathways. Solar energy is the key driver for photosynthesis and transpiration, modulating the flow of water and nutrients in soils moving aboveground and the flow of carbohydrates feeding belowground biota. Information transfer can be through hydraulic, electrical and chemical signaling, regulating plant development, abiotic and biotic damage and resource excess and limitation ( https://doi.org/10.15302/J-FASE-2021433).

Timothy S. George and coauthors highlighted the importance of harnessing biodiversity principles and physiological mechanisms in diversified cropping systems to achieve agricultural sustainability. They demonstrate that crop diversification combined with optimized management such as minimum tillage and reduced fertilizer inputs can improve soil quality, promoting soil biotic activities and associated functions. This will reduce the reliance on agrochemical inputs and environmental impacts, and increase climatic resilience ( https://doi.org/10.15302/J-FASE-2021437). Ruqiang Zhang and coworkers applied the One Health concept to design healthy dairy farms. They employed a wide range of soil and plant diversity measures such as intercropping, crop rotation and flower strips at both field and landscape scales to reduce the inputs of fertilizers, pesticides as well as soil compaction caused by heavy machines. The biodiversity-based solutions can help dairy farmers maintain a healthy eco-environment, while producing high-quality milk ( https://doi.org/10.15302/J-FASE-2022445). Emily C. Cooledge and her colleagues show that introducing multispecies leys with perennial legumes and other forbs into arable rotations will achieve multiple ecosystem benefits. This occurs mainly in three ways—return of livestock manure, permanent soil cover and less disturbance of soil—which promote soil food web interactions and soil aggregate stability, subsequently sequestering more carbon in soils ( https://doi.org/10.15302/J-FASE-2021439). Ting Luo and coauthors used the sugarcane cropping system in China as an example and analyzed the current challenges and problems and proposed a wide range of crop, soil and input management practices such as crop rotation, strategic tillage and optimized nutrient management to achieve sustainable sugarcane cropping systems ( https://doi.org/10.15302/J-FASE-2022442).

Focusing on the multi-objective assessment of different cropping systems, Léa Kervroëdan and coworkers assessed the agronomic and environmental impacts of food, feed and mixed (food, feed and biogas) cropping systems. They found that mixed cropping systems had a greater potential of bioenergy production and agronomic performance, but also higher greenhouse gas emissions. This warrants long-term examination of whether short-term higher greenhouse gas emissions can be offset by long-term soil carbon sequestration in this system ( https://doi.org/10.15302/J-FASE-2021435). Jeroen C. J. Groot and Xiaolin Yang applied a new mathematical approach of evolutionary multi-objective optimization to 30 cropping systems practiced on the North China Plain with the aim of overcoming the trade-offs between revenues, energy and nutrient supply and groundwater depletion at a regional level. This approach allows national or regional policymakers to plan growing area of certain sustainable cropping systems ( https://doi.org/10.15302/J-FASE-2021434).

As the Guest Editors, we thank all authors and reviewers for their valuable contributions to this Special Issue on Sustainable Crop and Pasture Systems. We also thank the FASE editorial team for their professional support.

Dr. Wen-Feng Cong, Associate Professor at College of Resource and Environmental Sciences, China Agricultural University. He obtained his PhD at Wageningen University in the Netherlands and conducted postdoctoral research at Aarhus University in Denmark. His research focuses on understanding the mechanisms underlying the positive effects of crop, genotype and cropping system diversity on soil carbon sequestration and soil phosphorus utilization, and applying the ecological mechanisms to design sustainable diversified cropping systems. He is author of over 30 papers in peer-reviewed scientific journals, including Trends in Plant ScienceTrends in Ecology & Evolution, and Global Change Biology. He is leading or participating in sustainable cropping systems related projects funded by the National Natural Science Foundation of China and the Chinese Academy of Engineering. He is acting as a member of the editorial board of Frontiers in Agronomyand Frontiers in Soil Science.

Dr. Hans Lambers, Emeritus Professor at the University of Western Australia and Distinguished Professor at College of Resource and Environmental Sciences, China Agricultural University. He obtained his PhD at the University of Groningen in the Netherlands and conducted postdoctoral research in Australia and the Netherlands, before taking up a position of Professor of Plant Ecophysiology at Utrecht University in the Netherlands and then Professor of Plant Biology and Ecology at the University of Western Australia in Australia. His research focuses on understanding plant–soil interactions and plant nutrition, with an emphasis on Australian plants and crop legumes. He is author of over 550 papers in peer-reviewed scientific journals, including Annual Review of Plant Biology,Trends in Plant ScienceTrends in Ecology & EvolutionNew PhytologistPlant and Soil,Global Change Biology, andNature Plants. He is leading or participating in projects on plant nutrition funded by the Australian Research Council. He is the lead author of an influential textbook, Plant Physiological Ecology (1998, 2008, and 2019), Editor in Chief of Plant and Soil(1992–present), and Associate Editor in Chief ofFrontiers of Agricultural Sciences and Engineering

Evidence chain-based causality identification in herb-induced liver injury: exemplification of a well-knownliver-restorative herb

null

《医学前沿(英文)》 2015年 第9卷 第4期   页码 457-467 doi: 10.1007/s11684-015-0417-8

摘要:

Herbal medicines have recently been recognized as the second most common cause of drug-induced liver injury (DILI) in the United States. However, reliable methods to identify the DILI causality of some herbs, such as Heshouwu (dried root of Polygonum multiflorum), remain lacking. In this study, a total of 12 307 inpatients with liver dysfunction and 147 literature-reported cases of Heshouwu DILI were screened. A general algorithm indicated that only 22.5% (9/40) and 30.6% (45/147) of all hospitalization and literature case reports, respectively, demonstrate the high probability of DILI causality of Heshouwu. By contrast, 95% (19/20) of all cases prospectively investigated by pharmacognosy, phytochemistry, and metabolomic tests exhibited highly probable causality, including a patient who was previously incorrectly attributed and a case that was excluded from Heshouwu causality by pharmacognostic evidence. Toxin (heavy metals, pesticides, and mycotoxins) contamination was also excluded from Heshouwu DILI causality. The objectivity of these screening methods for Heshouwu DILI diagnosis addresses safety concerns regarding stilbene-containing herbal medicines and dietary supplements.

关键词: drug-induced liver injury     pharmacognosy     metabolomics     stilbene     Polygonum multiflorum     Chinese herbal medicine    

Multistage analysis method for detection of effective herb prescription from clinical data

null

《医学前沿(英文)》 2018年 第12卷 第2期   页码 206-217 doi: 10.1007/s11684-017-0525-8

摘要:

Determining effective traditional Chinese medicine (TCM) treatments for specific disease conditions or particular patient groups is a difficult issue that necessitates investigation because of the complicated personalized manifestations in real-world patients and the individualized combination therapies prescribed in clinical settings. In this study, a multistage analysis method that integrates propensity case matching, complex network analysis, and herb set enrichment analysis was proposed to identify effective herb prescriptions for particular diseases (e.g., insomnia). First, propensity case matching was applied to match clinical cases. Then, core network extraction and herb set enrichment were combined to detect core effective herb prescriptions. Effectiveness-based mutual information was used to detect strong herb–symptom relationships. This method was applied on a TCM clinical data set with 955 patients collected from well-designed observational studies. Results revealed that groups of herb prescriptions with higher effectiveness rates (76.9% vs. 42.8% for matched samples; 94.2% vs. 84.9% for all samples) compared with the original prescriptions were found. Particular patient groups with symptom manifestations were also identified to help investigate the indications of the effective herb prescriptions.

关键词: effective prescription detection     herb set enrichment analysis     core network extraction     insomnia     personalized treatment    

AGRONOMIC AND ENVIRONMENTAL BENEFITS OF REINTRODUCING HERB- AND LEGUME-RICH MULTISPECIES LEYS INTO ARABLE

《农业科学与工程前沿(英文)》 2022年 第9卷 第2期   页码 245-271 doi: 10.15302/J-FASE-2021439

摘要:

Agricultural intensification and the subsequent decline of mixed farming systems has led to an increase in continuous cropping with only a few fallow or break years, undermining global soil health. Arable-ley rotations incorporating temporary pastures (leys) lasting 1–4 years may alleviate soil degradation by building soil fertility and improving soil structure. However, the majority of previous research on arable-ley rotations has utilized either grass or grass-clover leys within ungrazed systems. Multispecies leys, containing a mix of grasses, legumes, and herbs, are rapidly gaining popularity due to their promotion in agri-environment schemes and potential to deliver greater ecosystem services than conventional grass or grass-clover leys. Livestock grazing in arable-ley rotations may increase the economic resilience of these systems, despite limited research of the effects of multispecies leys on ruminant health and greenhouse gas emissions. This review aims to evaluate previous research on multispecies leys, highlighting areas for future research and the potential benefits and disbenefits on soil quality and livestock productivity. The botanical composition of multispecies leys is crucial, as legumes, deep rooted perennial plants (e.g., Onobrychis viciifolia and Cichorium intybus) and herbs (e.g., Plantago lanceolata) can increase soil carbon, improve soil structure, reduce nitrogen fertilizer requirements, and promote the recovery of soil fauna (e.g., earthworms) in degraded arable soils while delivering additional environmental benefits (e.g., biological nitrification inhibition and enteric methane reduction). Multispecies leys have the potential to deliver biologically driven regenerative agriculture, but more long-term research is needed to underpin evidence-based policy and farmer guidance.

关键词: bioactive forages / integrated crop-livestock systems / nitrogen cycling / plant secondary metabolites / soil carbon / soil quality    

Screening for main components associated with the idiosyncratic hepatotoxicity of a tonic herb, Polygonum

null

《医学前沿(英文)》 2017年 第11卷 第2期   页码 253-265 doi: 10.1007/s11684-017-0508-9

摘要:

The main constituents of a typical medicinal herb, Polygonum multiflorum (Heshouwu in Chinese), that induces idiosyncratic liver injury remain unclear. Our previous work has shown that cotreatment with a nontoxic dose of lipopolysaccharide (LPS) and therapeutic dose of Heshouwu can induce liver injury in rats, whereas the solo treatment cannot induce observable injury. In the present work, using the constituent “knock-out” and “knock-in” strategy, we found that the ethyl acetate (EA) extract of Heshouwu displayed comparable idiosyncratic hepatotoxicity to the whole extract in LPS-treated rats. Results indicated a significant elevation of plasma alanine aminotransferase, aspartate aminotransferase, and liver histologic changes, whereas other separated fractions failed to induce liver injury. The mixture of EA extract with other separated fractions induced comparable idiosyncratic hepatotoxicity to the whole extract in LPS-treated rats. Chemical analysis further revealed that 2,3,5,4'-tetrahydroxy trans-stilbene-2-O-β-glucoside (trans-SG) and its cis-isomer were the two major compounds in EA extract. Furthermore, the isolated cis-, and not its trans-isomer, displayed comparable idiosyncratic hepatotoxicity to EA extract in LPS-treated rats. Higher contents of cis-SG were detected in Heshouwu liquor or preparations from actual liver intoxication patients associated with Heshouwu compared with general collected samples. In addition, plasma metabolomics analysis showed that cis-SG-disturbing enriched pathways remarkably differed from trans-SG ones in LPS-treated rats. All these results suggested that cis-SG was closely associated with the idiosyncratic hepatotoxicity of Heshouwu. Considering that the cis-trans isomerization of trans-SG was mediated by ultraviolet light or sunlight, our findings serve as reference for controlling photoisomerization in drug discovery and for the clinical use of Heshouwu and stilbene-related medications.

关键词: Polygonum multiflorum     idiosyncratic hepatotoxicity     metabolomics     stilbene     cis-transisomerization    

Screening for main components associated with the idiosyncratic hepatotoxicity of a tonic herb,

Chunyu Li, Ming Niu, Zhaofang Bai, Congen Zhang, Yanling Zhao, Ruiyu Li, Can Tu, Huifang Li, Jing Jing, Yakun Meng, Zhijie Ma, Wuwen Feng, Jinfa Tang, Yun Zhu, Jinjie Li, Xiaoya Shang, Zhengsheng Zou, Xiaohe Xiao, Jiabo Wang

《医学前沿(英文)》 2021年 第15卷 第2期   页码 330-332 doi: 10.1007/s11684-020-0819-0

一种知识引导的基于中医学信息的药材推荐方法 Research Article

金哲,张引,苗嘉旭,杨易,庄越挺,潘云鹤

《信息与电子工程前沿(英文)》 2023年 第24卷 第10期   页码 1416-1429 doi: 10.1631/FITEE.2200662

摘要: 在中国几千年历史中,中医一直是人们关注的焦点。近年来,随着人工智能技术的兴起,部分研究开始以数据驱动的方式学习中医的方剂,即根据病人的症状推荐一组药材。现有大多数药材推荐模型忽略了中医领域的知识,例如药材和症状之间的关系,中药药方形成逻辑,等等。本文提出一种以知识为引导、结合中医学信息的药材推荐方法。本文使用的知识包括从中医典籍及处方中提取的知识图谱,以此得到症状和药材之间的交互和共生关系。利用这些信息,基于图注意力网络提取症状和药材的特征向量。在此基础上,将处方学等中医学信息加入到预测层中,提高了模型对药材的预测能力。最后,在中医处方数据集上进行的实验表明,该方法优于目前主流的药材推荐算法。

关键词: 中医;药材推荐;知识图谱;图注意力网络    

标题 作者 时间 类型 操作

Impact of introducing a herb pasture area into a New Zealand sheep and beef hill country farm system:

Cécile DURANTON, Cory MATTHEW

期刊论文

SUSTAINABLE CROP AND PASTURE SYSTEMS: FROM ABOVE- AND BELOWGROUND INTERACTIONS TO ECOSYSTEM MULTIFUNCTIONALITY

期刊论文

Evidence chain-based causality identification in herb-induced liver injury: exemplification of a well-knownliver-restorative herb

null

期刊论文

Multistage analysis method for detection of effective herb prescription from clinical data

null

期刊论文

AGRONOMIC AND ENVIRONMENTAL BENEFITS OF REINTRODUCING HERB- AND LEGUME-RICH MULTISPECIES LEYS INTO ARABLE

期刊论文

Screening for main components associated with the idiosyncratic hepatotoxicity of a tonic herb, Polygonum

null

期刊论文

Screening for main components associated with the idiosyncratic hepatotoxicity of a tonic herb,

Chunyu Li, Ming Niu, Zhaofang Bai, Congen Zhang, Yanling Zhao, Ruiyu Li, Can Tu, Huifang Li, Jing Jing, Yakun Meng, Zhijie Ma, Wuwen Feng, Jinfa Tang, Yun Zhu, Jinjie Li, Xiaoya Shang, Zhengsheng Zou, Xiaohe Xiao, Jiabo Wang

期刊论文

一种知识引导的基于中医学信息的药材推荐方法

金哲,张引,苗嘉旭,杨易,庄越挺,潘云鹤

期刊论文